Variant report
| Variant | rs11985873 |
|---|---|
| Chromosome Location | chr8:107041417-107041418 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10086055 | 0.81[EUR][1000 genomes] |
| rs10098367 | 0.91[ASN][1000 genomes] |
| rs10955408 | 0.82[EUR][1000 genomes] |
| rs1429681 | 0.81[EUR][1000 genomes] |
| rs1496181 | 0.82[EUR][1000 genomes] |
| rs1496183 | 0.81[EUR][1000 genomes] |
| rs1817939 | 0.82[EUR][1000 genomes] |
| rs1835268 | 0.80[AMR][1000 genomes] |
| rs2029878 | 0.81[EUR][1000 genomes] |
| rs2029879 | 0.81[EUR][1000 genomes] |
| rs2029880 | 0.81[EUR][1000 genomes] |
| rs2163124 | 0.81[EUR][1000 genomes] |
| rs28643398 | 0.91[ASN][1000 genomes] |
| rs34872724 | 0.82[EUR][1000 genomes] |
| rs55639043 | 0.82[EUR][1000 genomes] |
| rs62527360 | 0.81[EUR][1000 genomes] |
| rs62527405 | 0.82[EUR][1000 genomes] |
| rs6469030 | 0.82[EUR][1000 genomes] |
| rs6469032 | 0.82[EUR][1000 genomes] |
| rs6999580 | 0.81[EUR][1000 genomes] |
| rs7006651 | 0.83[AMR][1000 genomes] |
| rs7460291 | 0.82[EUR][1000 genomes] |
| rs7830426 | 0.82[EUR][1000 genomes] |
| rs7846149 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:107036400-107052000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
