Variant report

Variant	rs11986450
Chromosome Location	chr8:90054296-90054297
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10088616	1.00[ASN][1000 genomes]
rs10096752	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10107115	0.97[ASN][1000 genomes]
rs10447964	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10447965	0.98[ASN][1000 genomes]
rs10504871	0.94[ASN][1000 genomes]
rs10504872	0.97[ASN][1000 genomes]
rs10955882	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988832	0.80[EUR][1000 genomes]
rs11998037	0.80[EUR][1000 genomes]
rs12114264	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114451	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12171681	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1240053	0.90[EUR][1000 genomes]
rs1240054	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1240055	0.88[EUR][1000 genomes]
rs1240058	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1240061	0.93[ASN][1000 genomes]
rs1240082	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1240083	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1240113	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1240115	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240116	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240117	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240118	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254197	0.95[ASN][1000 genomes]
rs13254288	0.98[ASN][1000 genomes]
rs13254636	0.99[ASN][1000 genomes]
rs13263593	0.97[ASN][1000 genomes]
rs13264234	0.98[ASN][1000 genomes]
rs1483365	0.99[ASN][1000 genomes]
rs1483366	1.00[ASN][1000 genomes]
rs1681383	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1681384	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1681386	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1681387	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1681389	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1681390	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1681392	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16890421	0.80[EUR][1000 genomes]
rs1733957	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1922314	0.80[EUR][1000 genomes]
rs1922327	0.85[ASN][1000 genomes]
rs2222882	0.80[EUR][1000 genomes]
rs28715566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2952472	0.97[ASN][1000 genomes]
rs34421990	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34938859	0.97[ASN][1000 genomes]
rs34997800	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35053451	1.00[ASN][1000 genomes]
rs35198212	1.00[ASN][1000 genomes]
rs3886733	1.00[ASN][1000 genomes]
rs4391478	0.83[ASN][1000 genomes]
rs4395933	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55975353	1.00[ASN][1000 genomes]
rs56061839	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62532200	1.00[ASN][1000 genomes]
rs62532205	1.00[ASN][1000 genomes]
rs62532228	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62532229	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6469750	0.80[EUR][1000 genomes]
rs6469751	0.80[EUR][1000 genomes]
rs72662387	1.00[ASN][1000 genomes]
rs72662388	1.00[ASN][1000 genomes]
rs7834456	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs922913	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023176	chr8:89707267-90154549	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1015363	chr8:89707267-90158090	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022619	chr8:89709240-90137813	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1032038	chr8:89735634-90068849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1031054	chr8:89922522-90102748	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1016268	chr8:89927580-90104483	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv539670	chr8:89927580-90104483	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv891177	chr8:89941889-90166429	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv611718	chr8:90019419-90074757	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv982090	chr8:90023438-90094324	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90052800-90055000	Enhancers	HMEC	breast
2	chr8:90053600-90056200	Weak transcription	NHDF-Ad	bronchial
3	chr8:90054000-90054400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:90054200-90054600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:90054200-90055200	Enhancers	Dnd41	blood

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