Variant report

Variant	rs11988129
Chromosome Location	chr8:4158728-4158729
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10108386	0.81[JPT][hapmap]
rs10112948	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs10866965	0.90[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs10866966	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10866967	0.85[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs11136721	0.81[CEU][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs11136724	0.81[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs11776123	0.85[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs11779669	0.93[JPT][hapmap]
rs11780411	0.82[YRI][hapmap]
rs11783952	0.81[CEU][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs12056601	0.81[CEU][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs12056602	0.81[CEU][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs12681753	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13258176	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13259084	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap]
rs13261320	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13262226	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13266205	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13266499	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13268722	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13269472	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13277586	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13279918	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs13282958	0.89[CHD][hapmap];0.80[JPT][hapmap]
rs1394475	0.81[CEU][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs1394477	0.86[JPT][hapmap]
rs17413497	0.81[CEU][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs1910716	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs41374945	0.81[CEU][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap]
rs4313177	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4358819	1.00[JPT][hapmap];0.88[YRI][hapmap]
rs4535755	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4557722	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs4604461	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs4609212	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs4641088	1.00[JPT][hapmap]
rs4875313	0.90[CHD][hapmap]
rs4875315	1.00[JPT][hapmap]
rs4875317	0.86[JPT][hapmap]
rs4875319	0.89[CHD][hapmap];0.81[JPT][hapmap]
rs7461820	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9314522	0.85[CHD][hapmap]
rs977362	0.89[JPT][hapmap]
rs977363	0.86[JPT][hapmap]
rs977364	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs977365	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889924	chr8:3828138-4180844	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1032152	chr8:4114483-4186701	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1034687	chr8:4121520-4159120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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