Variant report

Variant	rs11989036
Chromosome Location	chr8:4784739-4784740
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10081492	1.00[JPT][hapmap]
rs11985845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12334427	1.00[CHB][hapmap]
rs12334743	1.00[CHB][hapmap]
rs12334744	1.00[CHB][hapmap]
rs12334748	1.00[CHB][hapmap]
rs12334931	1.00[CHB][hapmap]
rs12541001	1.00[CHB][hapmap]
rs13249466	1.00[CHB][hapmap]
rs13250617	1.00[JPT][hapmap]
rs13259602	1.00[CHB][hapmap]
rs13269117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13280124	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17348514	1.00[JPT][hapmap]
rs4341186	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4535756	0.90[CEU][hapmap]
rs4875129	1.00[CHB][hapmap]
rs5001120	1.00[CHB][hapmap]
rs5001124	1.00[CHB][hapmap]
rs5001125	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5001126	1.00[CHB][hapmap]
rs57424708	0.89[ASN][1000 genomes]
rs6981938	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6990414	1.00[CHB][hapmap]
rs6990769	1.00[CHB][hapmap]
rs7825060	1.00[CHB][hapmap]
rs7828818	1.00[CHB][hapmap]
rs7829151	1.00[CHB][hapmap]
rs7840682	1.00[CHB][hapmap]
rs7841741	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9657371	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029480	chr8:4497596-5081032	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020907	chr8:4693024-4801941	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv889976	chr8:4750266-4824335	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1028542	chr8:4758159-4824005	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031026	chr8:4771072-5054326	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4783800-4785200	Enhancers	HepG2	liver
2	chr8:4784600-4785000	Flanking Active TSS	Liver	Liver

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