Variant report

Variant	rs11992071
Chromosome Location	chr8:69984522-69984523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11989370	1.00[AFR][1000 genomes]
rs11994198	1.00[AFR][1000 genomes]
rs11997155	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv1025578	chr8:69963284-69985807	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69979600-69985200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:69980200-69984600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:69980600-69984800	Enhancers	HSMM	muscle
4	chr8:69981200-69985000	Enhancers	Osteobl	bone
5	chr8:69982400-69988200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:69982800-69984600	Enhancers	NH-A	brain
7	chr8:69983000-69984800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:69983800-69985000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr8:69984200-69985200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:69984200-69985200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:69984200-69988200	Enhancers	NHDF-Ad	bronchial
12	chr8:69984400-69984800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:69984400-69985800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:69984400-69985800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:69984400-69986000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:69984400-69986000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:69984400-69986000	Weak transcription	HSMMtube	muscle
18	chr8:69984400-69986600	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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