Variant report

Variant	rs11995823
Chromosome Location	chr8:68516716-68516717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11984622	1.00[MEX][hapmap]
rs11989425	1.00[MEX][hapmap]
rs11990115	1.00[MEX][hapmap]
rs11991309	1.00[LWK][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994733	1.00[MEX][hapmap]
rs11998063	1.00[MEX][hapmap]
rs12114345	1.00[MEX][hapmap]
rs1484605	1.00[MEX][hapmap]
rs16933306	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1032986	chr8:68468044-68789883	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68514200-68517200	Enhancers	Primary hematopoietic stem cells	blood
2	chr8:68514400-68520600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:68515000-68517200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:68515200-68516800	Weak transcription	Small Intestine	intestine
5	chr8:68515200-68517000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:68515200-68519200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:68515400-68516800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:68515400-68517000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:68516200-68517000	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:68516200-68539400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:68516400-68518200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:68516600-68517000	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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