Variant report

Variant	rs11997509
Chromosome Location	chr8:86363843-86363844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86363517..86364456-chr8:87100535..87101484,3	K562	blood:
2	chr8:86363798..86364482-chr8:86983865..86984679,3	MCF-7	breast:
3	chr8:86363458..86364443-chr8:86375139..86376055,5	MCF-7	breast:
4	chr8:86363515..86364382-chr8:86999196..87000344,6	MCF-7	breast:
5	chr8:86363504..86364383-chr8:86986429..86987168,3	MCF-7	breast:
6	chr8:86363334..86364626-chr8:87044525..87046442,21	MCF-7	breast:
7	chr8:86363631..86364597-chr8:87100458..87101386,2	MCF-7	breast:
8	chr8:86362726..86365485-chr8:86365567..86367420,2	K562	blood:
9	chr8:86363241..86365174-chr8:86985333..86987257,15	MCF-7	breast:
10	chr8:86362621..86364573-chr8:86984978..86986328,33	MCF-7	breast:
11	chr8:86363526..86364138-chr8:87045071..87045735,2	MCF-7	breast:
12	chr17:56933457..56934374-chr8:86363652..86364173,2	MCF-7	breast:
13	chr8:86363443..86364082-chr8:87045149..87046001,2	K562	blood:
14	chr8:86363678..86364494-chr8:86374198..86374980,2	MCF-7	breast:
15	chr8:86363550..86364394-chr8:86999009..87000158,4	MCF-7	breast:
16	chr8:86363666..86364465-chr8:87016777..87017559,2	MCF-7	breast:
17	chr20:59055461..59055980-chr8:86363823..86364460,2	K562	blood:
18	chr8:86361201..86364121-chr8:86985140..86987760,3	MCF-7	breast:
19	chr8:86211080..86212132-chr8:86363695..86364436,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11993199	1.00[AFR][1000 genomes]
rs11995864	1.00[AFR][1000 genomes]
rs2220765	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022463	chr8:86257031-86547831	Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv1804888	chr8:86263098-86986703	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv831377	chr8:86263107-86444141	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1028148	chr8:86310570-86553130	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2761206	chr8:86310582-86468868	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86351200-86364800	Weak transcription	Liver	Liver
2	chr8:86351200-86367200	Weak transcription	Left Ventricle	heart
3	chr8:86351200-86374000	Weak transcription	Fetal Intestine Small	intestine
4	chr8:86351600-86365200	Weak transcription	Brain Anterior Caudate	brain
5	chr8:86351600-86368200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:86354400-86375400	Weak transcription	Psoas Muscle	Psoas
7	chr8:86355200-86365200	Weak transcription	Stomach Mucosa	stomach
8	chr8:86358400-86375600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:86358800-86365000	Weak transcription	Fetal Lung	lung
10	chr8:86360400-86366000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:86360600-86364400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:86363600-86365800	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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