Variant report

Variant	rs11998209
Chromosome Location	chr8:127830011-127830012
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10113595	0.80[CEU][hapmap];0.93[EUR][1000 genomes]
rs11986358	0.91[ASN][1000 genomes]
rs13278024	0.94[EUR][1000 genomes]
rs1873187	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470475	0.82[EUR][1000 genomes]
rs7812779	0.84[EUR][1000 genomes]
rs979003	0.85[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891438	chr8:127670339-127845702	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127827000-127832800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:127827000-127837200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:127829800-127831600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:127829800-127831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:127829800-127831600	Weak transcription	NHDF-Ad	bronchial
6	chr8:127829800-127832800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:127829800-127832800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:127829800-127832800	Weak transcription	Fetal Heart	heart
9	chr8:127829800-127833000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:127829800-127833000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:127829800-127833000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:127830000-127832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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