Variant report

Variant	rs11999047
Chromosome Location	chr9:15592457-15592458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12002030	0.81[AFR][1000 genomes]
rs12002928	0.93[AFR][1000 genomes]
rs16933373	0.88[AFR][1000 genomes]
rs16933376	0.88[AFR][1000 genomes]
rs35546678	0.81[AFR][1000 genomes]
rs56144854	0.86[AFR][1000 genomes]
rs56304941	0.81[AFR][1000 genomes]
rs56333848	0.84[AFR][1000 genomes]
rs57108331	0.88[AFR][1000 genomes]
rs57201285	0.88[AFR][1000 genomes]
rs58163633	0.88[AFR][1000 genomes]
rs58892201	0.88[AFR][1000 genomes]
rs7033545	0.81[AFR][1000 genomes]
rs73644661	0.83[AFR][1000 genomes]
rs73644680	0.88[AFR][1000 genomes]
rs73644681	0.88[AFR][1000 genomes]
rs73644683	0.88[AFR][1000 genomes]
rs73644691	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1034795	chr9:15565670-15595591	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1028357	chr9:15565670-15622556	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15553800-15592600	Weak transcription	Left Ventricle	heart
2	chr9:15587000-15620400	Weak transcription	Pancreas	Pancrea
3	chr9:15588400-15597400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15588600-15600800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:15588600-15601000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:15589200-15609800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:15589400-15610600	Weak transcription	Thymus	Thymus
8	chr9:15591200-15592800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:15592200-15592800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr9:15592200-15592800	Enhancers	Fetal Thymus	thymus
11	chr9:15592400-15593400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr9:15592400-15593600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:15592400-15593600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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