Variant report

Variant	rs1199921
Chromosome Location	chr12:83278742-83278743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:83278119..83280472-chr12:83281151..83283722,2	K562	blood:
2	chr12:83276930..83278869-chr12:83287906..83289441,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10862518	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11115469	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1199916	0.95[ASN][1000 genomes]
rs1199917	0.88[ASN][1000 genomes]
rs1199918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199919	0.95[ASN][1000 genomes]
rs1199920	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12298134	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1508645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1508647	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1508648	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1616906	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1703088	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1703094	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1703097	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1703098	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1703102	0.83[ASN][1000 genomes]
rs1703110	0.98[ASN][1000 genomes]
rs1796159	1.00[ASN][1000 genomes]
rs1796181	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1796182	0.98[ASN][1000 genomes]
rs1796183	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1796184	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1796185	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1796190	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1796201	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1796202	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1796203	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1848441	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2662077	0.83[ASN][1000 genomes]
rs2733625	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34592898	0.88[ASN][1000 genomes]
rs6539696	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7133985	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7134264	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7296706	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7299821	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7300604	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7301010	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7304122	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7308048	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7310705	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7314923	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7972978	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9788273	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv427917	chr12:82917031-83279712	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv469490	chr12:83089431-83507269	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv559542	chr12:83089431-83507269	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv2758315	chr12:83101045-83357621	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759911	chr12:83101045-83357621	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv832472	chr12:83248283-83419753	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83242200-83289800	Weak transcription	Stomach Mucosa	stomach
2	chr12:83274400-83304200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:83274600-83280000	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:83274600-83280400	Weak transcription	Fetal Lung	lung
5	chr12:83274600-83284200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:83274600-83286000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:83274600-83298400	Weak transcription	Brain Angular Gyrus	brain
8	chr12:83274800-83282800	Weak transcription	Fetal Brain Female	brain
9	chr12:83277800-83282600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:83278200-83279000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr12:83278200-83279200	Weak transcription	Brain Hippocampus Middle	brain
12	chr12:83278200-83279400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:83278200-83282400	Weak transcription	Fetal Brain Male	brain
14	chr12:83278200-83313400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:83278400-83279000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:83278600-83278800	Enhancers	Aorta	Aorta
17	chr12:83278600-83282000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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