Variant report

Variant	rs11999819
Chromosome Location	chr9:73520033-73520034
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12000623	1.00[AMR][1000 genomes]
rs12004234	1.00[AMR][1000 genomes]
rs7863366	1.00[AMR][1000 genomes]
rs7869334	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73518000-73522400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:73518400-73520600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:73518400-73529400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73519200-73520200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:73519200-73521000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:73519400-73520200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:73520000-73520200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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