Variant report

Variant	rs1200116
Chromosome Location	chr1:169063097-169063098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1200129	0.84[EUR][1000 genomes]
rs28362571	0.91[EUR][1000 genomes]
rs7523965	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169056600-169063400	Enhancers	Brain Hippocampus Middle	brain
2	chr1:169056800-169064000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:169057200-169064000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:169058800-169064600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:169060000-169064400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:169060400-169068000	Weak transcription	Fetal Heart	heart
7	chr1:169061200-169064600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:169061400-169064600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:169062200-169065000	Weak transcription	Brain Anterior Caudate	brain
10	chr1:169062200-169067600	Weak transcription	Brain Angular Gyrus	brain
11	chr1:169062600-169064000	Weak transcription	Brain Substantia Nigra	brain
12	chr1:169062600-169064400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:169062800-169064600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:169063000-169064000	Enhancers	Thymus	Thymus
15	chr1:169063000-169064200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:169063000-169064200	Enhancers	Fetal Thymus	thymus
17	chr1:169063000-169064200	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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