Variant report
| Variant | rs12002921 |
|---|---|
| Chromosome Location | chr9:105275743-105275744 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:105274189..105276621-chr9:105279783..105281855,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs13300373 | 1.00[CHB][hapmap] |
| rs34427185 | 0.87[EUR][1000 genomes] |
| rs34655543 | 0.87[EUR][1000 genomes] |
| rs34690795 | 1.00[ASN][1000 genomes] |
| rs34961656 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35218801 | 1.00[ASN][1000 genomes] |
| rs67205151 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67567020 | 1.00[ASN][1000 genomes] |
| rs7023340 | 1.00[ASN][1000 genomes] |
| rs7023471 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7023482 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7040314 | 1.00[CHB][hapmap] |
| rs7851415 | 0.87[AFR][1000 genomes] |
| rs7858814 | 0.86[AFR][1000 genomes] |
| rs7872533 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893650 | chr9:105198550-105292037 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1040886 | chr9:105246682-105296385 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1055040 | chr9:105264905-105355578 | Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12002921 | FYTTD1 | trans | parietal | SCAN |
| rs12002921 | STX17 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
