Variant report

Variant	rs12003208
Chromosome Location	chr9:73613689-73613690
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12003537	1.00[AMR][1000 genomes]
rs73647936	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73604000-73614800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73605200-73614000	Weak transcription	Osteobl	bone
3	chr9:73610000-73614800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:73610200-73613800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:73610200-73616600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:73610600-73613800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:73610600-73619000	Weak transcription	Brain Substantia Nigra	brain
8	chr9:73610800-73614200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:73611000-73614000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:73611400-73614000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links