Variant report

Variant	rs12003228
Chromosome Location	chr9:110408335-110408336
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11792278	0.90[AFR][1000 genomes]
rs58497450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58521538	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58699609	1.00[EUR][1000 genomes]
rs58863066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59334406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60427111	1.00[EUR][1000 genomes]
rs61009260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7849612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7850292	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7854757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528269	chr9:110402957-110410888	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110401600-110410000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:110406200-110408800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110407600-110409000	Enhancers	Spleen	Spleen
4	chr9:110407600-110409600	Weak transcription	NHDF-Ad	bronchial
5	chr9:110407600-110409800	Weak transcription	HSMM	muscle
6	chr9:110407800-110409600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:110407800-110410200	Weak transcription	Ovary	ovary
8	chr9:110407800-110412200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:110408000-110409600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:110408000-110409800	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:110408000-110410200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:110408000-110410400	Weak transcription	Stomach Mucosa	stomach
13	chr9:110408000-110415400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:110408200-110408800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr9:110408200-110412000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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