Variant report

Variant	rs12003887
Chromosome Location	chr9:94691628-94691629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12001172	1.00[EUR][1000 genomes]
rs12001678	1.00[EUR][1000 genomes]
rs12002650	1.00[AMR][1000 genomes]
rs12003706	1.00[EUR][1000 genomes]
rs12005266	1.00[AMR][1000 genomes]
rs12344153	1.00[EUR][1000 genomes]
rs1406203	1.00[EUR][1000 genomes]
rs2049705	0.83[AFR][1000 genomes]
rs56227711	1.00[EUR][1000 genomes]
rs56239253	1.00[EUR][1000 genomes]
rs60217100	1.00[EUR][1000 genomes]
rs6479372	1.00[EUR][1000 genomes]
rs6479373	1.00[EUR][1000 genomes]
rs7032998	0.94[AFR][1000 genomes]
rs7850248	1.00[AMR][1000 genomes]
rs7857924	0.94[AFR][1000 genomes]
rs7863502	1.00[EUR][1000 genomes]
rs7873653	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94683600-94691800	Weak transcription	Fetal Lung	lung
2	chr9:94683600-94692000	Weak transcription	K562	blood
3	chr9:94686400-94692400	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:94686600-94696000	Weak transcription	Ovary	ovary
5	chr9:94690200-94693000	ZNF genes & repeats	Fetal Stomach	stomach
6	chr9:94690400-94692400	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr9:94690600-94692200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:94690600-94692600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:94690800-94696200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:94691000-94695400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:94691200-94691800	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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