Variant report

Variant	rs12004113
Chromosome Location	chr9:84787393-84787394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12000571	1.00[AMR][1000 genomes]
rs12000634	1.00[AMR][1000 genomes]
rs12000638	1.00[AMR][1000 genomes]
rs12001104	1.00[YRI][hapmap]
rs12002139	1.00[AMR][1000 genomes]
rs12002908	1.00[YRI][hapmap]
rs12003851	1.00[YRI][hapmap]
rs12004079	1.00[YRI][hapmap]
rs12004470	1.00[AMR][1000 genomes]
rs12006402	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84785800-84787800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:84786000-84788200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:84786400-84795800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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