Variant report

Variant	rs12004530
Chromosome Location	chr9:8179432-8179433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10976828	0.85[AFR][1000 genomes]
rs12003225	0.85[AFR][1000 genomes]
rs12338970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61302790	1.00[EUR][1000 genomes]
rs7048886	0.84[AFR][1000 genomes]
rs7848608	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7852154	0.91[ASN][1000 genomes]
rs7856102	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7860307	0.85[AFR][1000 genomes]
rs7861487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867266	0.91[ASN][1000 genomes]
rs9299061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022320	chr9:8163549-8216832	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv892222	chr9:8172046-8253019	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8179400-8179800	Active TSS	Brain Hippocampus Middle	brain
2	chr9:8179400-8180000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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