Variant report

Variant	rs12005176
Chromosome Location	chr9:104377181-104377182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10117679	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120369	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120524	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121191	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121465	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10123684	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124297	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1016429	0.81[AFR][1000 genomes]
rs11998854	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003142	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35441547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41375950	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889755	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58492917	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58955229	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58984022	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59550329	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60523933	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575858	0.98[EUR][1000 genomes]
rs62577380	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577381	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577383	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577392	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577393	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577402	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577404	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73659569	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73659570	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104362000-104387400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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