Variant report

Variant	rs1200574
Chromosome Location	chr6:70918115-70918116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1200564	0.89[AFR][1000 genomes]
rs1200565	0.89[AFR][1000 genomes]
rs1200567	0.94[AFR][1000 genomes]
rs1711709	0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs476026	1.00[ASW][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs476740	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs477680	1.00[ASW][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs487928	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs491690	0.84[YRI][hapmap]
rs513631	0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs531627	0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs540654	1.00[ASW][hapmap];0.83[LWK][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs558856	0.99[AFR][1000 genomes]
rs559027	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56855480	0.85[AMR][1000 genomes]
rs577010	1.00[ASW][hapmap];0.84[LWK][hapmap];0.86[MKK][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs607716	1.00[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes]
rs628028	1.00[ASW][hapmap];0.88[LWK][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs637054	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs652776	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs661521	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs692799	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs802177	0.85[MKK][hapmap]
rs802181	1.00[ASW][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs802183	0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70875600-70919800	Weak transcription	GM12878-XiMat	blood
2	chr6:70917600-70918600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:70917600-70918600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:70917800-70918600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:70917800-70918600	Strong transcription	Primary B cells from cord blood	blood

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