Variant report

Variant	rs12006101
Chromosome Location	chr9:17446767-17446768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10963033	1.00[CEU][hapmap]
rs10963051	1.00[CEU][hapmap]
rs10963055	1.00[CEU][hapmap]
rs10963058	1.00[CEU][hapmap]
rs11531711	1.00[CEU][hapmap]
rs11998987	0.95[EUR][1000 genomes]
rs11999234	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs12006188	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs16935663	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs17763952	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17830132	0.95[EUR][1000 genomes]
rs17830246	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2004279	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs2004280	0.87[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv892668	chr9:17371690-17532840	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892670	chr9:17378776-17507277	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv523411	chr9:17394536-17454799	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2422265	chr9:17396711-17598187	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17368400-17457800	Weak transcription	Pancreas	Pancrea
2	chr9:17411800-17481000	Weak transcription	Aorta	Aorta
3	chr9:17425400-17449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:17426400-17466800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:17431000-17453400	Weak transcription	Fetal Lung	lung
6	chr9:17434000-17453600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:17434000-17453600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:17436000-17447200	Weak transcription	Lung	lung
9	chr9:17436000-17448600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:17436000-17448800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:17439400-17466800	Weak transcription	NHDF-Ad	bronchial
12	chr9:17440400-17494600	Weak transcription	Left Ventricle	heart
13	chr9:17440600-17447000	Weak transcription	Fetal Stomach	stomach
14	chr9:17441200-17458000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr9:17441200-17467000	Weak transcription	Adipose Nuclei	Adipose
16	chr9:17441400-17466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:17441600-17447200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:17442000-17491800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:17442200-17467200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:17444600-17447200	Weak transcription	Ovary	ovary
21	chr9:17445000-17447000	Weak transcription	Dnd41	blood
22	chr9:17445000-17447400	Weak transcription	Liver	Liver
23	chr9:17445000-17449200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:17445400-17447000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:17445400-17447800	Weak transcription	Spleen	Spleen
26	chr9:17445400-17452200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:17446000-17448400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:17446000-17467400	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links