Variant report

Variant	rs12006154
Chromosome Location	chr9:14714107-14714108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14690708..14693231-chr9:14713433..14715842,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10115764	1.00[AMR][1000 genomes]
rs10125920	1.00[AMR][1000 genomes]
rs12000057	1.00[AMR][1000 genomes]
rs12001605	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003860	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005931	1.00[AMR][1000 genomes]
rs12339211	1.00[AMR][1000 genomes]
rs1389734	1.00[AMR][1000 genomes]
rs1389736	1.00[AMR][1000 genomes]
rs1389737	1.00[AMR][1000 genomes]
rs1494347	1.00[AMR][1000 genomes]
rs1494352	1.00[AMR][1000 genomes]
rs1494355	1.00[AMR][1000 genomes]
rs1542793	1.00[AMR][1000 genomes]
rs16932123	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2201379	1.00[AMR][1000 genomes]
rs4601430	1.00[AMR][1000 genomes]
rs4741432	1.00[AMR][1000 genomes]
rs61745880	1.00[AMR][1000 genomes]
rs6474857	1.00[AMR][1000 genomes]
rs7018782	1.00[AMR][1000 genomes]
rs7032648	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7038300	1.00[AMR][1000 genomes]
rs7871407	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv6482	chr9:14673695-14718568	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1025566	chr9:14687088-14791199	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv933345	chr9:14695436-14750474	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv892614	chr9:14712257-14756969	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14694000-14719400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:14704800-14719400	Weak transcription	Right Atrium	heart
3	chr9:14710000-14715000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:14710600-14717400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:14712600-14714200	Enhancers	Placenta	Placenta
6	chr9:14713600-14715200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:14713600-14716800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:14714000-14714200	Enhancers	Primary B cells from peripheral blood	blood

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