Variant report

Variant	rs1202119
Chromosome Location	chr6:73268092-73268093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1147535	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147556	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147557	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202095	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1202104	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1202109	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293889	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442813	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9442814	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9446699	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990501	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73263800-73271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:73265000-73270400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:73265000-73270600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:73265200-73268400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:73265200-73269000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:73265200-73270400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:73265400-73268200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:73265600-73269000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:73265600-73270600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:73265600-73270800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:73265800-73268800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:73265800-73268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:73265800-73269000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:73266000-73268200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:73266000-73268400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:73266200-73270600	Weak transcription	Osteobl	bone
17	chr6:73266400-73269400	Weak transcription	NHEK	skin
18	chr6:73266600-73270000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:73266600-73270000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:73268000-73268200	Active TSS	K562	blood

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