Variant report

Variant	rs12021564
Chromosome Location	chr1:56437972-56437973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11206696	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11206701	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12026559	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12036133	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12037326	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12037328	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12037782	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12040812	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12047844	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12562374	1.00[AFR][1000 genomes]
rs2404389	0.93[ASN][1000 genomes]
rs2404390	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56902790	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57468354	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58323289	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58324836	0.94[ASN][1000 genomes]
rs6588595	0.94[ASN][1000 genomes]
rs7531302	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56425800-56441000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:56432200-56439800	Weak transcription	Osteobl	bone
3	chr1:56436400-56439000	Weak transcription	HSMMtube	muscle
4	chr1:56436400-56439600	Weak transcription	HSMM	muscle
5	chr1:56436400-56440000	Weak transcription	Hela-S3	cervix
6	chr1:56436600-56439000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:56436600-56439800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:56436600-56439800	Weak transcription	Adipose Nuclei	Adipose
9	chr1:56436800-56438200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:56436800-56439200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:56436800-56439600	Weak transcription	Fetal Lung	lung
12	chr1:56437000-56439200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:56437600-56438000	Weak transcription	NHDF-Ad	bronchial
14	chr1:56437600-56441000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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