Variant report
Variant | rs12022558 |
---|---|
Chromosome Location | chr1:113871348-113871349 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:113870342..113873260-chr1:113880481..113882504,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10857991 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11102613 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12022522 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12023451 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12024820 | 0.85[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs12025961 | 0.85[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs12027464 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12028292 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12028450 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12029185 | 0.81[ASN][1000 genomes] |
rs12031069 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12031201 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12032132 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12032137 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12032749 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12033092 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12033996 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12034394 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12034896 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12035230 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12036205 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12036995 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12037686 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12047722 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs12048327 | 0.80[ASN][1000 genomes] |
rs12049447 | 0.82[JPT][hapmap] |
rs12734784 | 0.81[ASN][1000 genomes] |
rs1361765 | 0.85[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs17031447 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17031448 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2226155 | 0.85[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs35862767 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4838983 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs4838987 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4839309 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs4839310 | 0.82[YRI][hapmap] |
rs4839316 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4839317 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6664279 | 0.81[ASN][1000 genomes] |
rs6665552 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6674942 | 0.85[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs7525945 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv427719 | chr1:113570229-114078388 | Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
2 | nsv999873 | chr1:113840351-113949453 | Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 17 gene(s) | inside rSNPs | diseases |
3 | nsv1009534 | chr1:113856612-113920889 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1010110 | chr1:113856612-113969417 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 17 gene(s) | inside rSNPs | diseases |
5 | nsv1013228 | chr1:113861524-113919893 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv1005599 | chr1:113861524-113920889 | Weak transcription Active TSS Enhancers Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | nsv1012143 | chr1:113861524-113930779 | Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
8 | nsv1014757 | chr1:113861524-113969417 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 17 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:113868000-113875200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |