Variant report

Variant	rs12024304
Chromosome Location	chr1:211029385-211029386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10863866	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11119627	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12046805	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12121444	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35280154	0.87[ASN][1000 genomes]
rs9701252	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211024800-211035400	Weak transcription	HSMM	muscle
2	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
3	chr1:211026200-211029800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:211026800-211030400	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:211026800-211030600	Weak transcription	Brain Angular Gyrus	brain
6	chr1:211027000-211029800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:211027000-211030400	Weak transcription	Brain Anterior Caudate	brain
8	chr1:211027000-211030800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:211027000-211035400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:211027200-211030600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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