Variant report

Variant	rs12025600
Chromosome Location	chr1:173460320-173460321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173456168..173461242-chr1:173467676..173473413,6	K562	blood:
2	chr1:173459417..173461304-chr1:173495286..173497906,2	K562	blood:
3	chr1:173459418..173462700-chr1:173792313..173795552,3	MCF-7	breast:
4	chr1:173459396..173461482-chr1:173835091..173837556,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234741	Chromatin interaction
ENSG00000185278	Chromatin interaction
ENSG00000117593	Chromatin interaction
ENSG00000120334	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12093198	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173448000-173477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:173450000-173461800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:173450400-173460800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:173451000-173461800	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:173451000-173462200	Strong transcription	Liver	Liver
6	chr1:173456000-173460600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:173456800-173464600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:173457200-173466200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:173457200-173466800	Weak transcription	Gastric	stomach
10	chr1:173457400-173460400	Weak transcription	NHEK	skin
11	chr1:173457400-173463800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr1:173457600-173462200	Weak transcription	Fetal Brain Female	brain
13	chr1:173457600-173464400	Weak transcription	HepG2	liver
14	chr1:173457600-173466000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:173457800-173462000	Weak transcription	NHDF-Ad	bronchial
16	chr1:173457800-173465000	Weak transcription	Spleen	Spleen
17	chr1:173458200-173462200	Weak transcription	Primary B cells from cord blood	blood
18	chr1:173458400-173460800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:173458400-173461400	Weak transcription	NHLF	lung
20	chr1:173458400-173464400	Weak transcription	Hela-S3	cervix
21	chr1:173458600-173460400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:173458600-173460600	Weak transcription	Osteobl	bone
23	chr1:173458600-173460800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:173458600-173461000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:173458600-173461000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:173458600-173461000	Weak transcription	HMEC	breast
27	chr1:173458600-173461200	Weak transcription	Fetal Brain Male	brain
28	chr1:173458600-173461400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:173458600-173461400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:173458600-173461600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:173458600-173461800	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:173458600-173462200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr1:173458600-173462200	Weak transcription	Thymus	Thymus
34	chr1:173458600-173462400	Weak transcription	NH-A	brain
35	chr1:173458600-173462600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr1:173458600-173463000	Weak transcription	Psoas Muscle	Psoas
37	chr1:173458600-173467200	Weak transcription	HSMMtube	muscle
38	chr1:173458600-173468400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr1:173458600-173475600	Weak transcription	Fetal Kidney	kidney
40	chr1:173458600-173476600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:173458800-173460400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr1:173458800-173460400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr1:173458800-173460400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr1:173458800-173460400	Weak transcription	Fetal Thymus	thymus
45	chr1:173458800-173460600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr1:173458800-173460600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:173458800-173460600	Weak transcription	Fetal Intestine Large	intestine
48	chr1:173458800-173460800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:173458800-173460800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr1:173458800-173461200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links