Variant report
| Variant | rs12025823 |
|---|---|
| Chromosome Location | chr1:73319947-73319948 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FPGT-4 | chr1:73319838-73320112 | XLOC_000255 |
| 2 | lnc-FPGT-4 | chr1:73319837-73320112 | NONHSAT003920 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11210074 | 0.82[AMR][1000 genomes] |
| rs12039928 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12129942 | 0.94[ASN][1000 genomes] |
| rs1525978 | 0.94[ASN][1000 genomes] |
| rs1525979 | 0.94[ASN][1000 genomes] |
| rs1917881 | 0.94[ASN][1000 genomes] |
| rs2204499 | 1.00[YRI][hapmap] |
| rs2841192 | 0.94[ASN][1000 genomes] |
| rs2901713 | 0.94[ASN][1000 genomes] |
| rs7546928 | 0.94[ASN][1000 genomes] |
| rs940917 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013549 | chr1:73209040-73408373 | Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014200 | chr1:73310043-73345847 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
