Variant report

Variant	rs1202642
Chromosome Location	chr7:70701425-70701426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70700080..70701840-chr7:70703874..70706037,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2158736	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70693200-70701600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:70698400-70703400	Weak transcription	Right Ventricle	heart
3	chr7:70700400-70704800	Enhancers	Ovary	ovary
4	chr7:70700600-70701600	Enhancers	Colon Smooth Muscle	Colon
5	chr7:70700600-70701600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr7:70700600-70702200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:70700600-70702200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:70700600-70702200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:70700600-70702800	Enhancers	Left Ventricle	heart
10	chr7:70700600-70705400	Enhancers	Fetal Muscle Leg	muscle
11	chr7:70700600-70705600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr7:70700800-70702000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:70700800-70702400	Enhancers	Psoas Muscle	Psoas
14	chr7:70700800-70704400	Enhancers	Fetal Muscle Trunk	muscle
15	chr7:70700800-70704800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:70701200-70702000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:70701200-70703800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:70701200-70704000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:70701200-70704600	Enhancers	Fetal Stomach	stomach
20	chr7:70701200-70705000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:70701200-70705200	Enhancers	Rectal Smooth Muscle	rectum
22	chr7:70701400-70701600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr7:70701400-70701600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:70701400-70701800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:70701400-70702000	Enhancers	HSMMtube	muscle
26	chr7:70701400-70702200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:70701400-70702200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:70701400-70702200	Enhancers	Brain Angular Gyrus	brain
29	chr7:70701400-70702200	Enhancers	Brain Germinal Matrix	brain
30	chr7:70701400-70702200	Enhancers	Brain Hippocampus Middle	brain
31	chr7:70701400-70702200	Enhancers	Pancreas	Pancrea
32	chr7:70701400-70702400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:70701400-70702400	Enhancers	Brain Cingulate Gyrus	brain
34	chr7:70701400-70702400	Enhancers	Fetal Brain Male	brain
35	chr7:70701400-70702400	Enhancers	Fetal Brain Female	brain
36	chr7:70701400-70703800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:70701400-70704800	Enhancers	Fetal Heart	heart
38	chr7:70701400-70706800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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