Variant report

Variant	rs1202674
Chromosome Location	chr6:167169223-167169224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10155715	1.00[CHB][hapmap]
rs1202673	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs13437290	1.00[CHB][hapmap]
rs17514303	1.00[CHB][hapmap]
rs17518299	1.00[CHB][hapmap]
rs17590511	1.00[CHB][hapmap]
rs17590608	1.00[CHB][hapmap]
rs2345673	1.00[CHB][hapmap]
rs522720	1.00[CHB][hapmap]
rs635808	1.00[CHB][hapmap]
rs6415092	1.00[CHB][hapmap]
rs6456125	1.00[CHB][hapmap]
rs6456126	1.00[CHB][hapmap]
rs6456127	1.00[CHB][hapmap]
rs6900604	1.00[CHB][hapmap]
rs6905053	1.00[CHB][hapmap]
rs6913410	1.00[CHB][hapmap]
rs6913892	1.00[CHB][hapmap]
rs6919216	1.00[CHB][hapmap]
rs7357046	1.00[CHB][hapmap]
rs7749522	1.00[CHB][hapmap]
rs7749771	1.00[CHB][hapmap]
rs7750567	1.00[CHB][hapmap]
rs7754623	1.00[CHB][hapmap]
rs7763744	1.00[CHB][hapmap]
rs7768490	1.00[CHB][hapmap]
rs9295364	1.00[CHB][hapmap]
rs9457204	1.00[CHB][hapmap]
rs9457205	1.00[CHB][hapmap]
rs9457210	1.00[CHB][hapmap]
rs9457217	1.00[CHB][hapmap]
rs9457222	1.00[CHB][hapmap]
rs9459746	1.00[CHB][hapmap]
rs9459747	1.00[CHB][hapmap]
rs9459748	1.00[CHB][hapmap]
rs9459750	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1202674	DACT2	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167164200-167170400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:167164400-167170800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:167164800-167171000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:167165000-167170800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:167165000-167171600	Weak transcription	Gastric	stomach
6	chr6:167165600-167171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:167165800-167170800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:167166600-167170400	Weak transcription	Thymus	Thymus
9	chr6:167166600-167170800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:167166800-167170000	Weak transcription	Fetal Thymus	thymus
11	chr6:167166800-167170400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:167166800-167170600	Weak transcription	Primary T cells from cord blood	blood
13	chr6:167167000-167169400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr6:167167000-167169800	Weak transcription	NH-A	brain
15	chr6:167167800-167170600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:167168200-167170800	Weak transcription	Spleen	Spleen
17	chr6:167168400-167169400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr6:167168400-167170400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:167168400-167170600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:167168600-167170600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:167168800-167170600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:167168800-167170800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:167168800-167170800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:167168800-167180400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:167169000-167169400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr6:167169200-167169400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:167169200-167169400	Enhancers	Fetal Kidney	kidney
28	chr6:167169200-167170800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:167169200-167170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:167169200-167171200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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