Variant report

Variant	rs12029101
Chromosome Location	chr1:169460865-169460866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169460825..169464071-chr1:169495499..169498354,3	MCF-7	breast:
2	chr1:169460324..169462959-chr1:169483815..169485855,2	K562	blood:

Variant related genes	Relation type
ENSG00000198734	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59849608	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1001454	chr1:169387381-169465274	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169455800-169461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:169456200-169464000	Weak transcription	Esophagus	oesophagus
3	chr1:169456400-169461000	Weak transcription	Fetal Lung	lung
4	chr1:169456600-169461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:169456600-169461000	Weak transcription	NHDF-Ad	bronchial
6	chr1:169456600-169462200	Weak transcription	Placenta	Placenta
7	chr1:169456600-169464200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:169456600-169464200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:169456600-169464200	Weak transcription	HMEC	breast
10	chr1:169456800-169461200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:169457000-169461000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:169457000-169463800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:169457000-169464400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:169457400-169461000	Weak transcription	HSMMtube	muscle
15	chr1:169457800-169461400	Weak transcription	Left Ventricle	heart
16	chr1:169457800-169464400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:169458600-169464800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:169460400-169461600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:169460600-169461400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:169460800-169461200	Flanking Active TSS	GM12878-XiMat	blood
21	chr1:169460800-169461200	Enhancers	HepG2	liver
22	chr1:169460800-169461400	Enhancers	HSMM	muscle
23	chr1:169460800-169461600	Enhancers	Osteobl	bone

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