Variant report

Variant	rs12029852
Chromosome Location	chr1:9810414-9810415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12047085	1.00[CHB][hapmap]
rs7539650	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
2	nsv871610	chr1:9655795-10008221	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv832203	chr1:9726632-9860209	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:9750600-9813000	Weak transcription	Right Atrium	heart
2	chr1:9781200-9813200	Strong transcription	Stomach Smooth Muscle	stomach
3	chr1:9784000-9815400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:9784200-9815800	Strong transcription	Fetal Intestine Small	intestine
5	chr1:9786400-9814000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:9786600-9815200	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:9786800-9814000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:9787000-9813000	Weak transcription	Fetal Heart	heart
9	chr1:9787400-9811800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:9787600-9812000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:9787600-9813200	Strong transcription	Fetal Muscle Trunk	muscle
12	chr1:9787600-9815200	Strong transcription	Duodenum Mucosa	Duodenum
13	chr1:9788400-9811800	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:9789800-9815400	Strong transcription	Fetal Thymus	thymus
15	chr1:9789800-9815800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr1:9790600-9815400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:9791600-9814200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr1:9791600-9816000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr1:9792000-9815600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:9792600-9811000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:9793000-9811800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:9793400-9813200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:9793800-9815200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:9794000-9815600	Strong transcription	Fetal Stomach	stomach
25	chr1:9794200-9815600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:9794200-9815800	Strong transcription	Thymus	Thymus
27	chr1:9797600-9814400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:9798200-9815600	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:9798200-9816000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:9798600-9815400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:9798600-9815600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr1:9799400-9815600	Strong transcription	Dnd41	blood
33	chr1:9800000-9815200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr1:9800200-9815400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:9800400-9813400	Strong transcription	Colonic Mucosa	Colon
36	chr1:9800600-9821600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr1:9801000-9815800	Weak transcription	Psoas Muscle	Psoas
38	chr1:9801200-9837800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr1:9801400-9811400	Weak transcription	Fetal Brain Male	brain
40	chr1:9801400-9854200	Weak transcription	Fetal Kidney	kidney
41	chr1:9801600-9813000	Weak transcription	K562	blood
42	chr1:9804400-9813000	Weak transcription	A549	lung
43	chr1:9804400-9836600	Weak transcription	Small Intestine	intestine
44	chr1:9804600-9812200	Weak transcription	Stomach Mucosa	stomach
45	chr1:9804600-9836600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr1:9804800-9815600	Weak transcription	HUVEC	blood vessel
47	chr1:9805000-9813200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:9805800-9811200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr1:9806000-9815600	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr1:9806400-9812200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links