Variant report

Variant	rs1203091
Chromosome Location	chr6:120926672-120926673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1203066	0.95[AFR][1000 genomes]
rs1203069	0.88[AFR][1000 genomes]
rs1203071	0.88[AFR][1000 genomes]
rs1203072	0.86[AFR][1000 genomes]
rs1203078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1203080	0.84[AFR][1000 genomes]
rs1203085	0.88[AFR][1000 genomes]
rs1203089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1203092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788665	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428495	chr6:120861159-120954224	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120926000-120928600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:120926600-120928600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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