Variant report

Variant	rs12031657
Chromosome Location	chr1:72144756-72144757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11209805	0.84[CHB][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs11209818	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs11209841	0.90[JPT][hapmap]
rs11209842	0.90[JPT][hapmap]
rs11578097	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs11584866	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs1158573	0.81[JPT][hapmap]
rs11588321	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs12021864	0.84[CHB][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs12023733	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs12023757	0.82[EUR][1000 genomes]
rs12024388	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs12030035	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12030511	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12031842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12032545	0.82[ASN][1000 genomes]
rs12037107	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs12038728	0.84[CHB][hapmap];0.88[YRI][hapmap];0.82[ASN][1000 genomes]
rs12040327	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs12041607	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12043796	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12048869	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs12078969	1.00[CEU][hapmap]
rs1459796	0.82[EUR][1000 genomes]
rs1491198	0.90[JPT][hapmap]
rs1591382	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17091704	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs17091710	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs1870523	0.91[JPT][hapmap]
rs1870525	0.90[JPT][hapmap]
rs2125775	0.91[JPT][hapmap]
rs2125776	0.90[JPT][hapmap]
rs2125777	0.90[JPT][hapmap]
rs4649943	0.82[JPT][hapmap]
rs4649945	0.91[JPT][hapmap]
rs4649947	0.90[JPT][hapmap]
rs4649949	0.91[JPT][hapmap]
rs4649950	0.91[JPT][hapmap]
rs57388922	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59851000	0.84[EUR][1000 genomes]
rs61516147	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6424442	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6424447	0.82[EUR][1000 genomes]
rs6424448	0.90[JPT][hapmap]
rs6671557	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6679512	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6697370	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs6701156	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs72942265	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72942267	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72942302	0.96[AFR][1000 genomes]
rs72944111	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72944128	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72944129	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72944192	0.84[EUR][1000 genomes]
rs7528030	1.00[CEU][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap]
rs7531512	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1003446	chr1:72060680-72419918	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv461884	chr1:72077549-72238691	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv546476	chr1:72077549-72238691	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv461895	chr1:72079898-72206799	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv546477	chr1:72079898-72206799	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1006188	chr1:72081620-72215373	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv534993	chr1:72081620-72215373	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv817447	chr1:72098815-72558020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1008210	chr1:72099161-72374197	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv533779	chr1:72124095-72241965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72144200-72145000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr1:72144400-72144800	Active TSS	NHDF-Ad	bronchial

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