Variant report

Variant	rs12032206
Chromosome Location	chr1:223903202-223903203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:223884407..223886063-chr1:223901694..223904527,2	K562	blood:
2	chr1:223902474..223903675-chr1:223936616..223937446,3	MCF-7	breast:
3	chr1:223902286..223903884-chr1:223996819..223998348,2	K562	blood:
4	chr1:223887434..223890501-chr1:223901110..223904266,3	K562	blood:
5	chr1:223900439..223903816-chr1:223918326..223920507,3	MCF-7	breast:
6	chr1:223901725..223903941-chr1:223941728..223943865,2	MCF-7	breast:
7	chr1:223901424..223903659-chr1:224301052..224303387,3	K562	blood:
8	chr1:223897551..223903480-chr1:224031634..224036730,7	K562	blood:
9	chr1:223885961..223896993-chr1:223898177..223910405,32	MCF-7	breast:
10	chr1:223901394..223904242-chr1:223919607..223921227,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143514	Chromatin interaction
ENSG00000143756	Chromatin interaction
ENSG00000162909	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12022818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12030020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2230083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2275876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28370023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3738377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832681	chr1:223698048-224002691	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3361888	chr1:223725597-224114846	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1007380	chr1:223834380-224042190	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv535310	chr1:223834380-224042190	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv34082	chr1:223851018-224144509	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv873213	chr1:223885843-223924236	Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223900800-223903400	Flanking Active TSS	Adipose Nuclei	Adipose
2	chr1:223900800-223903400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr1:223900800-223904400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
4	chr1:223900800-223906000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:223901000-223903400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:223901000-223903800	Flanking Active TSS	HUVEC	blood vessel
7	chr1:223901000-223904200	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr1:223901000-223905200	Enhancers	Spleen	Spleen
9	chr1:223901000-223905800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr1:223901200-223903400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr1:223901200-223904600	Enhancers	Small Intestine	intestine
12	chr1:223901200-223904800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:223901200-223905400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr1:223901400-223904400	Transcr. at gene 5' and 3'	NHLF	lung
15	chr1:223901400-223904800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
16	chr1:223901400-223905600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:223901400-223907600	Transcr. at gene 5' and 3'	A549	lung
18	chr1:223901600-223903400	Enhancers	Pancreas	Pancrea
19	chr1:223901600-223903600	Enhancers	Ovary	ovary
20	chr1:223901600-223903600	Flanking Active TSS	NH-A	brain
21	chr1:223901600-223903800	Enhancers	Primary T cells from cord blood	blood
22	chr1:223901600-223903800	Enhancers	Fetal Intestine Small	intestine
23	chr1:223901600-223904000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:223901600-223904200	Enhancers	Brain Angular Gyrus	brain
25	chr1:223901600-223904200	Enhancers	Placenta	Placenta
26	chr1:223901600-223904600	Enhancers	Brain Hippocampus Middle	brain
27	chr1:223901600-223905200	Transcr. at gene 5' and 3'	NHEK	skin
28	chr1:223901600-223905800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:223901600-223906200	Enhancers	Primary B cells from peripheral blood	blood
30	chr1:223901600-223906400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr1:223901800-223903400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:223901800-223903600	Transcr. at gene 5' and 3'	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:223901800-223903600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr1:223901800-223903600	Transcr. at gene 5' and 3'	K562	blood
35	chr1:223901800-223903800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr1:223901800-223904000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:223901800-223904000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr1:223901800-223904000	Weak transcription	Aorta	Aorta
39	chr1:223901800-223904000	Enhancers	Brain Cingulate Gyrus	brain
40	chr1:223901800-223904000	Enhancers	Fetal Intestine Large	intestine
41	chr1:223901800-223904000	Transcr. at gene 5' and 3'	Osteobl	bone
42	chr1:223901800-223904200	Enhancers	Lung	lung
43	chr1:223901800-223904400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:223901800-223904600	Enhancers	Right Atrium	heart
45	chr1:223901800-223904800	Enhancers	Fetal Brain Female	brain
46	chr1:223901800-223905000	Enhancers	Fetal Heart	heart
47	chr1:223901800-223905000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr1:223901800-223905200	Enhancers	Placenta Amnion	Placenta Amnion
49	chr1:223901800-223905600	Genic enhancers	Fetal Muscle Trunk	muscle
50	chr1:223901800-223905800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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