Variant report

Variant	rs12032387
Chromosome Location	chr1:150370742-150370743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150316292..150318466-chr1:150368737..150371297,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117360	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11205363	0.90[EUR][1000 genomes]
rs11205372	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12027008	0.90[EUR][1000 genomes]
rs12119249	0.87[EUR][1000 genomes]
rs12137280	0.90[EUR][1000 genomes]
rs59325647	0.91[EUR][1000 genomes]
rs59844700	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6685125	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150338400-150405200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:150339400-150372800	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:150339400-150390600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:150339600-150372800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:150339800-150390000	Weak transcription	Thymus	Thymus
6	chr1:150340000-150416800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:150343400-150378000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:150343800-150378600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:150347000-150392400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:150347200-150372400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:150347200-150380000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:150348000-150390400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:150348400-150372600	Weak transcription	Hela-S3	cervix
14	chr1:150349000-150372000	Weak transcription	Fetal Lung	lung
15	chr1:150355600-150382000	Weak transcription	Lung	lung
16	chr1:150356400-150381400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:150359200-150392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:150359600-150381200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:150360000-150372800	Weak transcription	Adipose Nuclei	Adipose
20	chr1:150360000-150375400	Weak transcription	Primary T cells from cord blood	blood
21	chr1:150360000-150377600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:150360000-150378800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr1:150360000-150385000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:150360000-150385200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr1:150360000-150389600	Weak transcription	Dnd41	blood
26	chr1:150360000-150390800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:150360400-150374800	Weak transcription	Left Ventricle	heart
28	chr1:150360800-150377400	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:150360800-150387800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:150361800-150378800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:150362200-150377400	Weak transcription	Brain Angular Gyrus	brain
32	chr1:150362200-150378200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr1:150362200-150378600	Weak transcription	Psoas Muscle	Psoas
34	chr1:150362200-150382400	Weak transcription	Fetal Kidney	kidney
35	chr1:150362400-150371000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:150362400-150372400	Weak transcription	Fetal Thymus	thymus
37	chr1:150362400-150372800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr1:150362400-150373400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr1:150362400-150375800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr1:150362400-150380800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr1:150362400-150381000	Weak transcription	Primary B cells from cord blood	blood
42	chr1:150362400-150382400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:150362400-150389600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:150362600-150373600	Weak transcription	HepG2	liver
45	chr1:150362600-150375800	Weak transcription	Liver	Liver
46	chr1:150362600-150375800	Weak transcription	A549	lung
47	chr1:150362600-150376200	Weak transcription	Pancreas	Pancrea
48	chr1:150362600-150377400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr1:150362600-150377800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr1:150362600-150378000	Weak transcription	Fetal Intestine Large	intestine

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