Variant report

Variant	rs12034012
Chromosome Location	chr1:103727563-103727564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11164668	0.82[YRI][hapmap]
rs11164669	1.00[YRI][hapmap]
rs11164672	0.85[YRI][hapmap]
rs11164673	0.84[CEU][hapmap];0.87[YRI][hapmap]
rs11164719	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11586799	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12032097	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12407864	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12410662	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12569258	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12726315	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12734684	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12739207	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1415364	0.87[YRI][hapmap]
rs1528206	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1881271	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1881272	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2178161	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2376281	1.00[YRI][hapmap]
rs34925187	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35286522	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35408333	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4617426	0.86[ASN][1000 genomes]
rs4908291	1.00[YRI][hapmap]
rs6657513	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6689730	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6689743	0.82[ASN][1000 genomes]
rs7526357	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs954564	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9970114	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv432554	chr1:103673437-104128773	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103722000-103730800	Weak transcription	NH-A	brain
2	chr1:103722600-103731000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:103726200-103730600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:103727000-103731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links