Variant report

Variant	rs12035543
Chromosome Location	chr1:193018667-193018668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193009398..193013409-chr1:193015633..193018958,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GLRX2-2	chr1:193018662-193018981	NONHSAT008557

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12405677	1.00[MEX][hapmap]
rs4256792	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv998429	chr1:192961698-193050515	Strong transcription Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1002094	chr1:192968080-193084045	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192963800-193019600	Weak transcription	Ovary	ovary
2	chr1:192968000-193019400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:192979200-193025600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:192981400-193026200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:192983200-193023600	Weak transcription	Psoas Muscle	Psoas
6	chr1:192983200-193027800	Weak transcription	Aorta	Aorta
7	chr1:192984200-193026600	Weak transcription	NHLF	lung
8	chr1:192984400-193026400	Weak transcription	HUVEC	blood vessel
9	chr1:192984800-193025800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:192987400-193026200	Weak transcription	Fetal Kidney	kidney
11	chr1:192998800-193026200	Weak transcription	NHDF-Ad	bronchial
12	chr1:193006400-193023800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:193008800-193020600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:193009400-193020400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:193010000-193020400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:193010800-193020600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:193011000-193027800	Weak transcription	Small Intestine	intestine
18	chr1:193011400-193020400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:193011400-193020400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:193011400-193020400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:193011400-193026400	Weak transcription	Brain Angular Gyrus	brain
22	chr1:193011400-193027000	Weak transcription	Brain Anterior Caudate	brain
23	chr1:193011600-193020600	Strong transcription	Dnd41	blood
24	chr1:193011600-193027000	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:193011800-193020400	Strong transcription	Fetal Thymus	thymus
26	chr1:193012000-193020400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:193012000-193020400	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr1:193012000-193026400	Weak transcription	Fetal Heart	heart
29	chr1:193012000-193027600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr1:193012200-193026800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:193012400-193020400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr1:193012400-193020400	Strong transcription	NHEK	skin
33	chr1:193012400-193020600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr1:193012400-193027400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr1:193012600-193020400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr1:193012600-193020600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr1:193012600-193022400	Strong transcription	Hela-S3	cervix
38	chr1:193012600-193026600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr1:193012600-193027600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr1:193012800-193020400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:193012800-193023600	Weak transcription	Right Ventricle	heart
42	chr1:193013200-193019000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr1:193013200-193020000	Weak transcription	Colon Smooth Muscle	Colon
44	chr1:193013200-193026800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr1:193013200-193027400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr1:193013600-193026400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:193013800-193026600	Weak transcription	Fetal Brain Female	brain
48	chr1:193014400-193020200	Strong transcription	HSMM	muscle
49	chr1:193014600-193020400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:193014800-193027200	Weak transcription	Brain Germinal Matrix	brain

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