Variant report

Variant	rs1203576
Chromosome Location	chr7:40847832-40847833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDK13-8	chr7:40847756-40848013	NONHSAT120254

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1203570	0.81[CEU][hapmap]
rs1203575	0.84[CEU][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830973	chr7:40816419-40851594	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40843600-40850000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:40844200-40848600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:40844400-40850600	Enhancers	HSMM	muscle
4	chr7:40844600-40850400	Enhancers	HSMMtube	muscle
5	chr7:40844800-40848200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:40845000-40849600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:40845400-40850000	Enhancers	NHDF-Ad	bronchial
8	chr7:40846400-40849200	Enhancers	Primary B cells from cord blood	blood
9	chr7:40846400-40850000	Enhancers	Primary B cells from peripheral blood	blood
10	chr7:40846600-40850200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:40847000-40848600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr7:40847000-40849200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:40847000-40849800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:40847000-40849800	Enhancers	Osteobl	bone
15	chr7:40847200-40848200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:40847200-40848200	Enhancers	Ovary	ovary
17	chr7:40847400-40848600	Enhancers	NHLF	lung
18	chr7:40847600-40848000	Flanking Active TSS	NH-A	brain
19	chr7:40847600-40848800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:40847800-40848000	Enhancers	Colonic Mucosa	Colon
21	chr7:40847800-40848200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:40847800-40848200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:40847800-40848600	Enhancers	Aorta	Aorta
24	chr7:40847800-40848600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr7:40847800-40848800	Enhancers	Hela-S3	cervix
26	chr7:40847800-40848800	Enhancers	HMEC	breast
27	chr7:40847800-40849000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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