Variant report

Variant rs12036163
Chromosome Location chr1:221897105-221897106
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:221879600-221902400 Enhancers Brain Substantia Nigra brain
2 chr1:221882800-221899000 Genic enhancers HSMM muscle
3 chr1:221887200-221899000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr1:221887800-221898400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr1:221888000-221899000 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr1:221888000-221903000 Enhancers Brain Hippocampus Middle brain
7 chr1:221888800-221898600 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:221889400-221899600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:221889800-221899000 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr1:221890400-221898400 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:221890800-221906400 Weak transcription Right Ventricle heart
12 chr1:221890800-221910200 Weak transcription Lung lung
13 chr1:221891800-221911000 Weak transcription Gastric stomach
14 chr1:221891800-221913000 Weak transcription Fetal Intestine Large intestine
15 chr1:221892200-221898200 Enhancers HSMMtube muscle
16 chr1:221892400-221901400 Weak transcription Small Intestine intestine
17 chr1:221892600-221898000 Weak transcription Stomach Mucosa stomach
18 chr1:221892800-221897400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr1:221892800-221899000 Weak transcription Thymus Thymus
20 chr1:221893000-221913600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr1:221893200-221898000 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:221893200-221899400 Genic enhancers Liver Liver
23 chr1:221894600-221898000 Enhancers Skeletal Muscle Female skeletal muscle
24 chr1:221894600-221899800 Enhancers Brain Angular Gyrus brain
25 chr1:221894800-221897400 Enhancers Brain Inferior Temporal Lobe brain
26 chr1:221894800-221897600 Enhancers K562 blood
27 chr1:221894800-221898600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
28 chr1:221894800-221898800 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:221895000-221898000 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:221895000-221898400 Enhancers Psoas Muscle Psoas
31 chr1:221895200-221897600 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
32 chr1:221895200-221900800 Enhancers Brain Cingulate Gyrus brain
33 chr1:221895400-221897600 Genic enhancers Muscle Satellite Cultured Cells --
34 chr1:221895400-221897600 Transcr. at gene 5' and 3' GM12878-XiMat blood
35 chr1:221895400-221901400 Enhancers Brain Anterior Caudate brain
36 chr1:221895400-221901800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:221895600-221897600 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
38 chr1:221895800-221897200 Enhancers Skeletal Muscle Male skeletal muscle
39 chr1:221896000-221897200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:221896000-221897600 ZNF genes & repeats HMEC breast
41 chr1:221896000-221897800 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
42 chr1:221896000-221898000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:221896000-221899400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr1:221896000-221899800 Enhancers NH-A brain
45 chr1:221896000-221900200 Enhancers Hela-S3 cervix
46 chr1:221896200-221897200 Flanking Active TSS Osteobl bone
47 chr1:221896200-221897600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:221896200-221898200 ZNF genes & repeats Primary hematopoietic stem cells blood
49 chr1:221896200-221898800 Weak transcription Right Atrium heart
50 chr1:221896400-221897200 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell

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