Variant report

Variant	rs12036824
Chromosome Location	chr1:169738217-169738218
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10919267	1.00[JPT][hapmap]
rs12036888	0.81[AFR][1000 genomes]
rs12038025	0.81[AFR][1000 genomes]
rs12038193	0.81[AFR][1000 genomes]
rs12041598	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12044536	0.82[GIH][hapmap]
rs2272912	0.82[GIH][hapmap]
rs2272915	0.90[YRI][hapmap]
rs3917391	0.85[ASN][1000 genomes]
rs3917421	0.82[YRI][hapmap];0.90[AFR][1000 genomes]
rs3917724	1.00[MEX][hapmap]
rs4363475	0.81[AFR][1000 genomes]
rs4987278	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4987282	1.00[CHD][hapmap];0.94[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4987313	1.00[ASW][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4987342	1.00[JPT][hapmap]
rs7526937	1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12036824	WNT5A	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169735400-169749000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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