Variant report

Variant	rs12037357
Chromosome Location	chr1:157994905-157994906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10430456	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs11264874	0.98[ASN][1000 genomes]
rs12021619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12039337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12118340	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs12134949	1.00[CEU][hapmap]
rs12568166	1.00[CEU][hapmap]
rs16839617	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs16839627	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16839630	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16839636	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1925038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1972216	0.97[GIH][hapmap]
rs1980765	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2224932	0.84[JPT][hapmap]
rs4445460	1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs4971174	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs4971177	0.87[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap]
rs4971179	0.97[GIH][hapmap]
rs4971183	0.97[GIH][hapmap]
rs5018263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs55712021	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59269620	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6427415	0.95[ASN][1000 genomes]
rs6666443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6680191	0.98[ASN][1000 genomes]
rs6690504	1.00[CEU][hapmap]
rs7414379	0.98[ASN][1000 genomes]
rs7527064	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530591	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7537784	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs7554764	0.98[ASN][1000 genomes]
rs7555783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157975400-157996800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:157984400-157995400	Weak transcription	Fetal Brain Female	brain
3	chr1:157985200-157995000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:157985200-158006000	Weak transcription	Fetal Thymus	thymus
5	chr1:157987200-157996400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:157989400-158007400	Weak transcription	Gastric	stomach
7	chr1:157990000-157996400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:157991200-157996600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:157991400-157996200	Enhancers	NHDF-Ad	bronchial
10	chr1:157991400-157997000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:157991400-158000400	Weak transcription	Fetal Intestine Large	intestine
12	chr1:157991800-157995000	Weak transcription	Stomach Mucosa	stomach
13	chr1:157991800-158002200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:157991800-158007400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:157992000-157999200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:157992200-157995200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:157992200-157995600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:157992200-157996200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:157992600-157996400	Genic enhancers	NHLF	lung
20	chr1:157992800-157995200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:157992800-158000600	Weak transcription	Thymus	Thymus
22	chr1:157993000-157995600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:157993000-157995600	Weak transcription	Spleen	Spleen
24	chr1:157993000-157996200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr1:157993000-157996400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:157993000-157996600	Enhancers	Adipose Nuclei	Adipose
27	chr1:157993000-157997200	Strong transcription	NHEK	skin
28	chr1:157993000-158007400	Weak transcription	HSMMtube	muscle
29	chr1:157993000-158007600	Weak transcription	Esophagus	oesophagus
30	chr1:157993200-157995400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:157993200-157995600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:157993200-157996000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:157993200-158007400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr1:157993400-157995200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:157993400-157995800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr1:157993400-157997800	Weak transcription	Hela-S3	cervix
37	chr1:157993600-157995600	Weak transcription	HMEC	breast
38	chr1:157993800-157996600	Enhancers	Fetal Kidney	kidney
39	chr1:157994000-157996400	Enhancers	Osteobl	bone
40	chr1:157994200-157995800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr1:157994200-157995800	Strong transcription	Fetal Intestine Small	intestine
42	chr1:157994200-157996200	Enhancers	Right Atrium	heart
43	chr1:157994200-157998200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr1:157994400-157995200	Enhancers	HSMM	muscle
45	chr1:157994400-157995400	Enhancers	H9 Cell Line	embryonic stem cell
46	chr1:157994400-157995600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:157994400-157995800	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr1:157994400-157995800	Enhancers	Left Ventricle	heart
49	chr1:157994400-157995800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr1:157994400-157996000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links