The 2.0 version of rSNPBase

Variant report

Variant rs12038400
Chromosome Location chr1:56666257-56666258
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56653800-56669400 Enhancers Placenta Placenta
2 chr1:56657600-56667800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
3 chr1:56662200-56668600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
4 chr1:56662800-56666600 Enhancers Psoas Muscle Psoas
5 chr1:56662800-56667600 Enhancers Fetal Muscle Leg muscle
6 chr1:56663000-56667200 Enhancers Skeletal Muscle Female skeletal muscle
7 chr1:56663200-56668000 Enhancers Skeletal Muscle Male skeletal muscle
8 chr1:56663200-56670000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:56663400-56666400 Enhancers Left Ventricle heart
10 chr1:56664400-56669200 Weak transcription Right Ventricle heart
11 chr1:56664600-56666800 Enhancers HSMMtube muscle
12 chr1:56664800-56667000 Enhancers Hela-S3 cervix
13 chr1:56665400-56666400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr1:56665600-56666400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:56665600-56666400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
16 chr1:56665600-56666800 Enhancers Placenta Amnion Placenta Amnion
17 chr1:56665600-56668800 Enhancers NHDF-Ad bronchial
18 chr1:56665600-56669000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:56665800-56666600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:56666000-56667000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:56666200-56666400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:56666200-56666400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:56666200-56666600 Enhancers Muscle Satellite Cultured Cells --
24 chr1:56666200-56666800 Enhancers Fetal Lung lung
25 chr1:56666200-56666800 Enhancers Fetal Muscle Trunk muscle
26 chr1:56666200-56667400 Enhancers Fetal Stomach stomach
27 chr1:56666200-56668400 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015