Variant report

Variant	rs1203874
Chromosome Location	chr20:22539992-22539993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1203875	0.93[ASN][1000 genomes]
rs1203876	0.92[ASN][1000 genomes]
rs1203877	0.94[ASN][1000 genomes]
rs1203879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1203880	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1203881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1203883	0.93[ASN][1000 genomes]
rs1203884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1203886	0.93[ASN][1000 genomes]
rs1203889	0.81[ASN][1000 genomes]
rs1203892	0.80[ASN][1000 genomes]
rs2471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4815127	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6048191	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs6048192	0.80[ASN][1000 genomes]
rs6048196	0.80[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22536200-22544800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr20:22537200-22542400	Weak transcription	K562	blood
5	chr20:22537600-22543800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr20:22539000-22540800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
7	chr20:22539200-22540800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr20:22539200-22542400	Weak transcription	HepG2	liver
9	chr20:22539400-22545200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr20:22539800-22540000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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