Variant report
| Variant | rs1204166 |
|---|---|
| Chromosome Location | chr6:13836166-13836167 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs1204177 | 1.00[ASN][1000 genomes] |
| rs1204182 | 1.00[ASN][1000 genomes] |
| rs1204183 | 1.00[ASN][1000 genomes] |
| rs1204190 | 1.00[ASN][1000 genomes] |
| rs1204198 | 1.00[ASN][1000 genomes] |
| rs1204199 | 1.00[ASN][1000 genomes] |
| rs1204200 | 1.00[ASN][1000 genomes] |
| rs1204201 | 1.00[ASN][1000 genomes] |
| rs1204203 | 1.00[ASN][1000 genomes] |
| rs1204204 | 1.00[ASN][1000 genomes] |
| rs1204206 | 1.00[ASN][1000 genomes] |
| rs1204212 | 1.00[ASN][1000 genomes] |
| rs1204215 | 1.00[ASN][1000 genomes] |
| rs1204220 | 1.00[ASN][1000 genomes] |
| rs1204223 | 1.00[ASN][1000 genomes] |
| rs1204245 | 1.00[ASN][1000 genomes] |
| rs1204247 | 1.00[ASN][1000 genomes] |
| rs1204248 | 1.00[ASN][1000 genomes] |
| rs1204253 | 1.00[ASN][1000 genomes] |
| rs1204255 | 1.00[ASN][1000 genomes] |
| rs1204256 | 1.00[ASN][1000 genomes] |
| rs1204257 | 1.00[ASN][1000 genomes] |
| rs1204258 | 1.00[ASN][1000 genomes] |
| rs1204259 | 1.00[ASN][1000 genomes] |
| rs1204260 | 1.00[ASN][1000 genomes] |
| rs1204261 | 1.00[ASN][1000 genomes] |
| rs1204262 | 1.00[ASN][1000 genomes] |
| rs1308729 | 1.00[ASN][1000 genomes] |
| rs1308730 | 1.00[ASN][1000 genomes] |
| rs16874389 | 1.00[ASN][1000 genomes] |
| rs56042707 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59038247 | 1.00[ASN][1000 genomes] |
| rs6459172 | 1.00[ASN][1000 genomes] |
| rs6914225 | 1.00[ASN][1000 genomes] |
| rs6914405 | 1.00[ASN][1000 genomes] |
| rs6937431 | 1.00[ASN][1000 genomes] |
| rs723584 | 1.00[ASN][1000 genomes] |
| rs73723776 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73726011 | 1.00[ASN][1000 genomes] |
| rs73726014 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3475107 | chr6:13834840-13863839 | Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3475109 | chr6:13835023-13863759 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1204166 | TMEM14C | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:13835000-13836200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 2 | chr6:13835400-13836400 | Weak transcription | K562 | blood |
| 3 | chr6:13835400-13836600 | Weak transcription | GM12878-XiMat | blood |
