Variant report
| Variant | rs12041888 |
|---|---|
| Chromosome Location | chr1:216458347-216458348 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:216457785..216460190-chr1:216476621..216478590,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11804470 | 1.00[CHB][hapmap] |
| rs12021946 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12022087 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12022815 | 1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12024013 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12025020 | 0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12029697 | 1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12030105 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs12030122 | 1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs12036065 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs12039789 | 1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12041679 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs12042600 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs12043028 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12043064 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap] |
| rs12043533 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs12045821 | 1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12047606 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17026652 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006504 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv535288 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv549199 | chr1:216384908-216814702 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv998835 | chr1:216439672-216482235 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv2830096 | chr1:216454483-216475542 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
