Variant report

Variant	rs12042665
Chromosome Location	chr1:152230246-152230247
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12030667	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12046937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv946325	chr1:152221751-152240196	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152220800-152230400	Weak transcription	Brain Angular Gyrus	brain
2	chr1:152223200-152230400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:152224600-152230400	Weak transcription	Fetal Kidney	kidney
4	chr1:152225400-152232200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:152225600-152232200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:152229600-152230800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr1:152230200-152230400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:152230200-152230600	ZNF genes & repeats	Aorta	Aorta
9	chr1:152230200-152230600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr1:152230200-152230600	ZNF genes & repeats	Fetal Stomach	stomach
11	chr1:152230200-152230600	ZNF genes & repeats	Left Ventricle	heart
12	chr1:152230200-152230600	ZNF genes & repeats	Ovary	ovary
13	chr1:152230200-152230600	ZNF genes & repeats	Psoas Muscle	Psoas
14	chr1:152230200-152230800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:152230200-152230800	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr1:152230200-152230800	ZNF genes & repeats	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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