Variant report
| Variant | rs12042899 |
|---|---|
| Chromosome Location | chr1:179255140-179255141 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000057252 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10798655 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12138973 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12725375 | 0.80[ASN][1000 genomes] |
| rs12749666 | 0.80[ASN][1000 genomes] |
| rs2050450 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2050451 | 0.80[ASN][1000 genomes] |
| rs2247061 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2254214 | 0.80[ASN][1000 genomes] |
| rs2254580 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2257089 | 0.80[ASN][1000 genomes] |
| rs2257100 | 0.80[ASN][1000 genomes] |
| rs2484440 | 0.80[ASN][1000 genomes] |
| rs2493116 | 0.80[ASN][1000 genomes] |
| rs2493117 | 0.80[ASN][1000 genomes] |
| rs2493118 | 0.80[ASN][1000 genomes] |
| rs2783391 | 0.80[ASN][1000 genomes] |
| rs2783392 | 0.80[ASN][1000 genomes] |
| rs2783393 | 0.80[ASN][1000 genomes] |
| rs433722 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005278 | chr1:179197645-179371395 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:179250800-179256600 | Weak transcription | HepG2 | liver |
