Variant report

Variant	rs12044717
Chromosome Location	chr1:225070053-225070054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12023355	0.91[EUR][1000 genomes]
rs12030732	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs12044717	DUSP10	cis	parietal	SCAN
rs12044717	SUSD4	cis	cerebellum	SCAN
rs12044717	FBXO28	cis	parietal	SCAN
rs12044717	CNIH3	cis	parietal	SCAN
rs12044717	SUSD4	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225063000-225071600	Weak transcription	Ovary	ovary
2	chr1:225066400-225070600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:225067000-225073000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:225067400-225071800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:225068200-225071400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:225068600-225072000	Weak transcription	Fetal Stomach	stomach
7	chr1:225068800-225070400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:225068800-225071400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:225069000-225072000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:225069000-225072400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:225069200-225070200	Weak transcription	Fetal Lung	lung
12	chr1:225069200-225070800	Weak transcription	Fetal Intestine Large	intestine
13	chr1:225069200-225071000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:225069200-225071200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:225069600-225070200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:225069600-225071800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:225069600-225071800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:225069600-225073400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:225069600-225073400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:225069800-225070400	Enhancers	HSMM	muscle
21	chr1:225069800-225070600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:225069800-225070600	Enhancers	Liver	Liver
23	chr1:225069800-225071800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:225069800-225072600	Weak transcription	A549	lung
25	chr1:225070000-225070200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:225070000-225071600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr1:225070000-225071600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr1:225070000-225071600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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