Variant report

Variant	rs1204958
Chromosome Location	chr3:157914140-157914141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1070894	0.85[AMR][1000 genomes]
rs1095633	0.81[AMR][1000 genomes]
rs11706229	0.84[AMR][1000 genomes]
rs13060100	0.80[EUR][1000 genomes]
rs13065148	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13072413	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1608968	0.81[EUR][1000 genomes]
rs1618377	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1624094	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1724727	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1724728	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1724729	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1729997	0.89[AMR][1000 genomes]
rs1729999	0.89[AMR][1000 genomes]
rs1730043	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1730100	0.89[AMR][1000 genomes]
rs2682397	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4320039	0.80[EUR][1000 genomes]
rs4320040	0.80[EUR][1000 genomes]
rs4336069	0.80[EUR][1000 genomes]
rs4396839	0.80[EUR][1000 genomes]
rs4410410	0.81[EUR][1000 genomes]
rs4558712	0.80[EUR][1000 genomes]
rs4561782	0.80[EUR][1000 genomes]
rs6441176	0.80[EUR][1000 genomes]
rs6762154	0.80[EUR][1000 genomes]
rs6765767	0.83[AMR][1000 genomes]
rs6786057	0.80[EUR][1000 genomes]
rs6802443	0.80[EUR][1000 genomes]
rs698980	0.89[AMR][1000 genomes]
rs698986	0.89[AMR][1000 genomes]
rs698988	0.88[AMR][1000 genomes]
rs698989	0.89[AMR][1000 genomes]
rs699919	0.81[AMR][1000 genomes]
rs699921	0.88[AMR][1000 genomes]
rs699922	0.88[AMR][1000 genomes]
rs699924	0.89[AMR][1000 genomes]
rs7617503	0.80[EUR][1000 genomes]
rs7628936	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7629021	0.84[AMR][1000 genomes]
rs7629432	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7629518	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7651288	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs827121	0.81[AMR][1000 genomes]
rs827143	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs827148	0.88[AMR][1000 genomes]
rs827150	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827151	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827156	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827158	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827159	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827161	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827175	0.81[AMR][1000 genomes]
rs827802	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs827803	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827804	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827806	0.88[AMR][1000 genomes]
rs827807	0.88[AMR][1000 genomes]
rs852110	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs862351	0.88[AMR][1000 genomes]
rs864859	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9290022	0.81[EUR][1000 genomes]
rs9819408	0.82[AMR][1000 genomes]
rs9819411	0.83[AMR][1000 genomes]
rs9852745	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157868200-157916200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:157887000-157916400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:157889800-157918600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:157909600-157914200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:157911200-157916400	Weak transcription	Dnd41	blood

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